Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYIQILPETFSIISSLVLLLLGIVFNRRTIN-LLALGCTVITLIILILSAKDSGFFPFNSLLKLDLYIRSAQGLILIAGILVLLLL-NLSKY---DYEYEFSILILFTLFGMITLVSANNLISFYLSFELMSIPLYVLASFNKDSVYSCEAGVKYFTLSALSSCIMLYGMSLLYGYTGLVNFSELSSFLENHQMTYGIVFGLVLILIGLCFKLAIAPFHMWAPDVYQGAPTIVTAFFSTVPKAALVTFLIRFFMGEELVGVEKYFQPVLLYISALSVLISAFGALRQRNLKRLLAYSSIGHIGFILASLSIFT--RMGTDSSLIYLVIYIITNIGLFSYFIQIDD-----DDCSVANLSGIGKKRPVLAFHLSILLFSMAGIPPLAGFFAKLFIFKSLVNSGFIGMSLIFIVASVISCYYYLSIIKAMYFDKPSDSKVIYS--KS---LFIVTSVASLINIVLFMCVEDLYSLIHLVTKSL |
| 3RKO Chain:N ((7-484)) | -NLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIGLNAALVSLWF-VGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYP-WLEGYNDNKDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGK-----N-EPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYA-PVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQP-----SNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRLAMPLM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -568242 for 4189 contacts (-135.7/contact) +
2D Compatibility (PS) -45731 + (NN) -10201 + (LL) 1568
1D Compatibility (HY) -47600 + (ID) 6950
Total energy: -677156.0 ( -161.65 by residue)
QMean score : 0.349
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