Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVNGGQLKKINQKWLIIGTGLLLFMMMLPSIILLAKMTIGLVMVLVVAIAIKIASKTISNVLEDKQADPNQLTSQTTQSRIINLAVGLVSIFTGGLSLLIIAKTGIAVICAAVVTLAIYEYAKDYK-YAEDKEIGKSINDKLDEIAKNTTNFIVSGIEKLVSPQEQQV
4R84 Chain:A ((343-415))
--------------------------------------------------------------------DKEQLQQQYSQSPLPNFIFTGTTTWAGGETKEYYAQQQVNVINNAINETSPYYLGKDYDLFFKGHPAGGVINDIILGSFPDMINIPAKISFEVLMMTDMLP
General information:
TITO was launched using:
RESULT:
Template:
4R84.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15278 for 379 contacts (-40.3/contact) +
2D Compatibility (PS) -7512 + (NN) 465 + (LL) 7184
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -17791.0 ( -46.94 by residue)
QMean score : 0.123
(partial model without unconserved sides chains):
PDB file :
Tito_4R84.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R84-query.scw
PDB file :
Tito_Scwrl_4R84.pdb
: