Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKALITCFIFLVCSFTRSYASDDVHLEKSETELYEEAVELFDQKKYKQAIRAFRKIEDLYPFSYWAMKAKLLSGISHYNMDDYSSAASDMDDYIYIYPNGEDLPYVYYLRVLSY----------YMQINRVQLGQQTAYKALELAAEYVNLFSESEYIEEMKEKVRLITDHILKKEYSIGKFYFRRGEYLAAIKRFQNIISS-KDYSYFPRSINYLIAAYSALGLDLEAGQYESLLAENLKENTVEQ
3TGO Chain:A ((13-225))
---------------------------DNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS-------
General information:
TITO was launched using:
RESULT:
Template:
3TGO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87458 for 1474 contacts (-59.3/contact) +
2D Compatibility (PS) -21882 + (NN) -10019 + (LL) 3196
1D Compatibility (HY) -12400 + (ID) 2200
Total energy: -130763.0 ( -88.71 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_3TGO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TGO-query.scw
PDB file :
Tito_Scwrl_3TGO.pdb
: