Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNFEQIKKDITENDVVLYMKGTSDFPQCGFSGLVVSILKKLNVKFKYINVLENDEIRQSIKKFSNWPTIPQLYIKGEFIGGCDITREIYEKGELQSLLKEKKIVE
1YKA Chain:A ((3-102))
-TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY
General information:
TITO was launched using:
RESULT:
Template:
1YKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61521 for 802 contacts (-76.7/contact) +
2D Compatibility (PS) -10926 + (NN) -5318 + (LL) 208
1D Compatibility (HY) -12800 + (ID) 2350
Total energy: -92707.0 ( -115.59 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_1YKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YKA-query.scw
PDB file :
Tito_Scwrl_1YKA.pdb
: