Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYVCGPTVYDTAHIGNARSIVVYDVLFQLLKFCYGKATYVRNITDI---DDKIINAANEKDSSIESISTYYTRAFHEDMRSINCVEPTHEPKAAENIKYIIELIEYLLQSGHAYESNKHIYFSIESYPEYGALSGKKIDELEHGSRVEVGENKKHPGDFVLW---KPANDTDYKLSSYWNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDLQFPHHENEIAQNKSAFAGSMFAKYWVHNGSLTVNKEKMSKSLFNIVKVRDLLDSGIKGEVIRYALFKTHYRKPLDWTESVISESQ-------ETLNKFYRLLRGIDVASIEKS--------DVEVSRDFIETLKNDLNIPEALAILHEMATKINKTNNENEKLKLTESFIKSARFIGLLESSYQEWFTAGISYQEI------KRLIDLRKVAKQNKDYDAADKIRDQLKQMGVTISDNEDGTTTW |
| 3SP1 Chain:A ((45-490)) | VYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHL------------LTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAG----------------FKRNKTDFVLWFTNSK-----MK----WDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAI-AECFLNKKWCDVFVHGEFLIMD----------FITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWE----IIKSDNLSFVSKLRLAFI----FDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFFAKKGFVLV--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SP1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174603 for 2859 contacts (-61.1/contact) +
2D Compatibility (PS) -39408 + (NN) -18367 + (LL) 3076
1D Compatibility (HY) -37600 + (ID) 6650
Total energy: -273552.0 ( -95.68 by residue)
QMean score : 0.511
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