Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIFLDSVDLNEIEELKEF--IDGITTNPSLIAKSG-RKDKYEGLISEICSIVTGPVSVEVVASNHEDMVKEGLKLTKIASNIVVKLPLTYEGLISCKKLWTEHKIPANITLCFSPGQALLAAKAGACFISPFVGRLDDISYDGLLLIEDICTIYSNYGFDTKILVASVRSPTHVIEAARLGANSITVPAKVLRQLLNHPLTDRGLAIFEKDWSTKQ
3S1V Chain:A ((1-212))
MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEH-INTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVS
General information:
TITO was launched using:
RESULT:
Template:
3S1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148591 for 1719 contacts (-86.4/contact) +
2D Compatibility (PS) -22614 + (NN) -2906 + (LL) 64
1D Compatibility (HY) -22800 + (ID) 5500
Total energy: -202347.0 ( -117.71 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3S1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S1V-query.scw
PDB file :
Tito_Scwrl_3S1V.pdb
: