Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKSGGGSCNGRDSAGCRLGIKKNG--KVIPGNIIVRQRGTKFHPGKNVGMGKDHTIFAKVEGWIRFR-KSVNKKTFIDIVPVDNV
2RDO Chain:W ((1-81))
-AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE---
General information:
TITO was launched using:
RESULT:
Template:
2RDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 296296 for 2145 contacts (138.1/contact) +
2D Compatibility (PS) -7087 + (NN) -2818 + (LL) 372
1D Compatibility (HY) 1600 + (ID) 350
Total energy: 288013.0 ( 134.27 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_2RDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDO-query.scw
PDB file :
Tito_Scwrl_2RDO.pdb
: