Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSHESIEKNLNFVKKLNNVNDSVLKIENLALAYDNKKV--LDGINISIEKGDIVTILGPNGGGKTSLMKVVAGISKNYTGSVIFAD-----NIKISYMPQNFSISKLMPITVEYFLLNSFSK--------KLKKNQ--SVITEVIELVGIGSILKNQVLEISAGQMQLLLLAHCLIAEPDLIILDEPVSAMDINARAKFYDIIGEIAKKRLISILMTSHDLSSIVPCSDYI-ICINHTIYCQGKPGKIMEDRTLGEIFSSYIAK
1OXV Chain:A ((6-225))
-------------------------VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI
General information:
TITO was launched using:
RESULT:
Template:
1OXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149670 for 1512 contacts (-99.0/contact) +
2D Compatibility (PS) -21838 + (NN) -8990 + (LL) 1596
1D Compatibility (HY) -14800 + (ID) 3150
Total energy: -196852.0 ( -130.19 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1OXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXV-query.scw
PDB file :
Tito_Scwrl_1OXV.pdb
: