Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAECELV
3VGT Chain:A ((2-139))
-ATERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPESAAREIAYFFEESEIC
General information:
TITO was launched using:
RESULT:
Template:
3VGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60741 for 1073 contacts (-56.6/contact) +
2D Compatibility (PS) -14761 + (NN) -3365 + (LL) 208
1D Compatibility (HY) -12400 + (ID) 4300
Total energy: -95359.0 ( -88.87 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_3VGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VGT-query.scw
PDB file :
Tito_Scwrl_3VGT.pdb
: