Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDENKHIYNAVI----NDLSWKYLFLFGPKGSGKTHLAHIWQSINNAI----------------FIN----------VNNFISEIRYS-NAFILEDVQ------DIQDEATLLHCYNYMKENNKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIERSFCSINRIIEKIDNGSMGSNVTIPFVSTLLKRDTT
2Z4S Chain:A ((101-296))
-----------DYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHL---LQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTE--LFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF
General information:
TITO was launched using:
RESULT:
Template:
2Z4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88244 for 1117 contacts (-79.0/contact) +
2D Compatibility (PS) -16995 + (NN) -8191 + (LL) 1392
1D Compatibility (HY) -10000 + (ID) 2350
Total energy: -124388.0 ( -111.36 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_2Z4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z4S-query.scw
PDB file :
Tito_Scwrl_2Z4S.pdb
: