Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINIKNLVHAFSKLPSLGPSSSRRLVIHLLQNKEKVMLPLASSIKELADLIIECKVCGNLDTQSPCSICTNPKRDTKLMCVVEELGDLWAFEKGSIYSGMYHVLGGRLSAINGIGPEKLNLDNIPKRVTEFKIEEVIIAINPTLEGQVTVQYIIESLKNLDVKVSRLACGIPMGGEIDYLDEGTLKAALTSRQEYESNIK
3VDP Chain:A ((18-211))
-STSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV-----
General information:
TITO was launched using:
RESULT:
Template:
3VDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122618 for 1263 contacts (-97.1/contact) +
2D Compatibility (PS) -20935 + (NN) -9914 + (LL) 500
1D Compatibility (HY) -16400 + (ID) 3700
Total energy: -173067.0 ( -137.03 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_3VDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDP-query.scw
PDB file :
Tito_Scwrl_3VDP.pdb
: