Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSNYFALF-----KIEPAFNISLDELEKKYIELS--KTDINERQSQNMENINKAYQVLKSPLKRAEHLLNLF-GVRSQEDQHNFEILNESMEIREYLLDCNN----------LQLASGMIDEKIKDCIKNLTNNFAVKNFDEAAMQVLRLKYLYKSFEEIKNETNSNF
3UO2 Chain:A ((11-165))
-TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQ--------SEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPGK-
General information:
TITO was launched using:
RESULT:
Template:
3UO2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42030 for 815 contacts (-51.6/contact) +
2D Compatibility (PS) -13980 + (NN) -9726 + (LL) 760
1D Compatibility (HY) -8000 + (ID) 1800
Total energy: -74776.0 ( -91.75 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_3UO2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UO2-query.scw
PDB file :
Tito_Scwrl_3UO2.pdb
: