Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLIRIGTRGSSLAIAQALEAKQKLLDLFSSLSVEIIKIKTSGDKYANANLAEIGGKGLFIKEIETELIKSNIDMAVHSLKDVPAFFSKDLTIPCILERLSPYDTFISNKYKSLKSLPQQAIIATSSIRRKVQLLNFRPDLNIVPLRGNVTTR---LQNQSFDGIILAEAGLIRLKKDYLITEVLSPKTMLSAVGQGAICIQCRKNDIKIIDLLEKINNNKSFIRVKSERSFMKTVNGSCFTPLAALAKYV-SENVLHLYCMLADKKNIYFTERTSFVEDAEKMGMDAGLELKSKCL |
1YPN Chain:A ((5-294)) | -VLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDV----------GQGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YPN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131542 for 2295 contacts (-57.3/contact) +
2D Compatibility (PS) -30015 + (NN) -15430 + (LL) 884
1D Compatibility (HY) -18400 + (ID) 6000
Total energy: -200503.0 ( -87.37 by residue)
QMean score : 0.385
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