Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQDAEAKLKVKLSKRYIPPGNPGGTNFYEDEDFAESYKLYEKRRELLKKKKLQDQTNI--NINKEKLAKKLKEKKIANLDSELSDTEACVI----NDEEDAMVNQHGINIARLKGAIFIDQGPISQREDEQHESERQEGKKATLTREKKVSPINVTIKDTRSKRTCSHDSIVDLNNVSSNGSDSFGSAADAVN |
2GGQ Chain:A ((30-92)) | -----------------------------------SKPLIEYQIEYLRKCGIRDITVIVSSKNKEYFEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFSNEKEICNIITLKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERGELELTDA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GGQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 11977 for 258 contacts (46.4/contact) +
2D Compatibility (PS) -6076 + (NN) -3051 + (LL) 1428
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -72.0 ( -0.28 by residue)
QMean score : 0.456
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