Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPIICALDTQDLNEAISLANTLRDKVGMIKLGLEFFAAHGPSGVREVAKCNVPTFLDLKLHDIPNTVAKTVEAIKVLNIEILTLHISGGTKML---EEALSIVKDTKTKLIGVTVLTSMSNEDLSELGIAREVKSQVILFAKLAKKVGLHGIVCSALEAQEVYQECGKDFKIITSGIRV-GFGHDDQKRTATPKEAINSGADYIVIGRPITKSNSPANSAELILKSLS
1L2U Chain:A ((15-241))
-SPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQ---------IMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ
General information:
TITO was launched using:
RESULT:
Template:
1L2U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161538 for 1784 contacts (-90.5/contact) +
2D Compatibility (PS) -22916 + (NN) -8855 + (LL) 172
1D Compatibility (HY) -16000 + (ID) 4400
Total energy: -213537.0 ( -119.70 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_1L2U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2U-query.scw
PDB file :
Tito_Scwrl_1L2U.pdb
: