Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFKEERTMTNYTVDTLNLGKFITESGEVIDNLRLRYEHVGYHGQP---LVVVCHALTGN-HLTYGTDD-YPGWWREIIDGGYIPIHD-YQFLTFDVIGSPFGSSSPLN-DPH--------FPKKLTLRDIVRANERGIQALGYDKINILIGGSLGGMQAMELLYNQQFEVDKAIILAATSRTSSYSRAFNEIARQAIHL-------------GGKEGLSIARQLGFLTYRSSKSYD-----------ERFTPD-EVVAYQQHQGNKFKEHFDLNCYLTLLDVLDSHNIDRGRTDVTHIFKNLE----TKVLTMGFIDDLLYPDDQVRALGERFKYHRH--FFVPDN--VGHDGFLLNFSTWAPNLYHFLNLKHFKRK
3VVM Chain:A ((38-392))--------------------FAMRRGGALYGARIAYETFGSLNAARDNAVLVLTALSGDAHAASRPDDPTPGWWEAMVGPGKPVDTDLWHVICVNSLGSCKGSTGPASTDPRTGEPYRLSFPE-LSIEDIADAAAHTVRALGISRLACVVGASMGGMSALALLARHPELARTHISLSGAVHALPFSIAVRSLQREAIRSDPGWLQGHYDEGEGPRRGMLTARKLGMMTYRSAQEWDCRFGRTRIGER-RFGPEFEVESYLDFHAQRFADRFDPNSYLYLSHAMDQFDLGDGGGGGGGAPGALSRMRVERALVMGARTDILFPLSQQQEIADGLSAGGADVSFLPVDTPAGHDAFLVDIERFGPPVAKFLAI------


General information:
TITO was launched using:
RESULT:

Template: 3VVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188953 for 2605 contacts (-72.5/contact) +
2D Compatibility (PS) -32786 + (NN) -13957 + (LL) 2056
1D Compatibility (HY) -15600 + (ID) 4750
Total energy: -253990.0 ( -97.50 by residue)
QMean score : 0.392

(partial model without unconserved sides chains):
PDB file : Tito_3VVM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VVM-query.scw
PDB file : Tito_Scwrl_3VVM.pdb: