Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQGWWFPVMASAFLIFTIVIMFIAGTGQYGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNKGMISDTILHFSSSIVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNVRYSHWLRFVWPVVAFVLIFGGGLLITQVLIYS
4MBG Chain:B ((332-390))
-------------------------------------------------------------------------------------------------------------------------------VPRYMNIATLLPWLSARQYAPEGGFSGRTNKLVDGCYSHWVGNCWPLVQAAL---------------
General information:
TITO was launched using:
RESULT:
Template:
4MBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44369 for 280 contacts (-158.5/contact) +
2D Compatibility (PS) -4837 + (NN) 3435 + (LL) 10756
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -37315.0 ( -133.27 by residue)
QMean score : -0.142
(partial model without unconserved sides chains):
PDB file :
Tito_4MBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MBG-query.scw
PDB file :
Tito_Scwrl_4MBG.pdb
: