Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTTLLVVEDDEAILHLIDVALTMNYYKVVTAKTGKEADFRLRTE-QPDIILLDLGLPDIDGLSLIQQFRDF-VDTPIIVISARTEEQTIVEVLDRGANDYMTKPFNIDELRARIRVALRMSRSTETIQSR-FTNGPLTIDFDAKSVLVNEQSVHLTPNEFQLLTILCHHVGKVLTYQVLLKSLYGYVNHTEMAALRVHMASLRKKLNYTQDPNTEKKLIITHPRIGYQMQHLE
1YS6 Chain:A ((26-231))
--------------------GLRLSGFEVATAVDGAEA-LRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSAR--VDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGP----RLLHTVRGVGFVLR---
General information:
TITO was launched using:
RESULT:
Template:
1YS6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140623 for 1571 contacts (-89.5/contact) +
2D Compatibility (PS) -21502 + (NN) -9402 + (LL) 2776
1D Compatibility (HY) -15200 + (ID) 3800
Total energy: -187751.0 ( -119.51 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1YS6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YS6-query.scw
PDB file :
Tito_Scwrl_1YS6.pdb
: