Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYDKKMINRINRIQGQLNGIIKMMEEGKDCKDVITQISASKSSLQRLMGIIISENLIECVKVA---ADDEESSQELINEAVNLLVKSK
4M1P Chain:A ((25-97))
------IMKRLKRIEGQVRGVQKMVEDNRYCIDILVQISAIQAALRQVGMQLLERHANHCVAKAIREGSGEQSLRELMD----------
General information:
TITO was launched using:
RESULT:
Template:
4M1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2660 for 351 contacts (7.6/contact) +
2D Compatibility (PS) -7348 + (NN) -1013 + (LL) 1276
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -11175.0 ( -31.84 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_4M1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1P-query.scw
PDB file :
Tito_Scwrl_4M1P.pdb
: