Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLEIPTKYDSLLKKKVSLKTSFTFMLIIVLIIWSFIYTGFNFGDLMIGIPQIGDLFKQMIPPDFEYLQQITTPMLDTIRMAIVSTVLGSIVSIPIALLCASNIVHQKWISIPSRFILNIVRTIP---DLLLAAIFVAVFGIGQIP----GILALFILTICIIGKLLYESLETIDPGPMEAMTAVGANKIKWIVFGVVPQAISSFMSYVLYAFEVNIRASAVLGLVGAGGIGLFYDQTLGLFQYPKTATIILFTLVIVVVIDYISTKVRAHLA
4YMV Chain:D ((22-167))
-----------------------------------------------------------------------------TLKLTFLAVTIGVLMGLFIALMKMSSI---KPIKLVASSYIEVIRGTPLLVQLLLIYNGLMQFGM-NIPAFTAGVSALAINSSAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIVSVIG----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130033 for 969 contacts (-134.2/contact) +
2D Compatibility (PS) -14195 + (NN) 2062 + (LL) 10504
1D Compatibility (HY) -11200 + (ID) 1850
Total energy: -144712.0 ( -149.34 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: