Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVLNNLQKKFTNSKMV-LNNVNAKFRSGSINCIVGVNGAGKTTLLNIISSILMPTKGDVYLNSESIFENSTL-----KKEIFYTPVNPFFYENLSAKDNLYLICSLYNRKIDQITIEKTIKDVG--LNIED-LNIPVYNFSSGMKQKLNFASMLLVDSNVLLLDEPFNALDHVAQKNFTRILKGLVSKEKI-IIFTSHLPNTILELSENIYLLKDGCFTDKRKAQSFNQTTLETWLLESQKEVIPYEEK
1OXT Chain:A ((4-228))
-IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF--PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL----------------------
General information:
TITO was launched using:
RESULT:
Template:
1OXT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149234 for 1693 contacts (-88.1/contact) +
2D Compatibility (PS) -22515 + (NN) -3817 + (LL) 2436
1D Compatibility (HY) -16400 + (ID) 3200
Total energy: -192730.0 ( -113.84 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1OXT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXT-query.scw
PDB file :
Tito_Scwrl_1OXT.pdb
: