Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMIKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQQLSNNFGLQ
3GVM Chain:A ((2-93))
MSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIAS-----
General information:
TITO was launched using:
RESULT:
Template:
3GVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1430 for 516 contacts (-2.8/contact) +
2D Compatibility (PS) -9898 + (NN) 522 + (LL) 176
1D Compatibility (HY) -8800 + (ID) 2100
Total energy: -21530.0 ( -41.72 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_3GVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVM-query.scw
PDB file :
Tito_Scwrl_3GVM.pdb
: