Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKSKDRDAIKAMFKKWTVMADRMMDGDTVGKTSNNPLMPPVDTGESIG-LGASKLTITFGISKSLM-KKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGFIS-----AKGKETPRNLMAFKDGTINPRKSNQ--LKDYVFI-----DDGWAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGKEFDEIDLKAKDSHGEYIIDKDAHTRLAK----EANTSI-LRRAFNYVDGTDDRTGNFETGLLFIAFQK-ATKQFIDIQNNLGSNDKLNEYITHRGSASFLVLPGVSKGG-YLGETLFD |
| 2Y4E Chain:A ((28-401)) | ------------DARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLTQGGAAPETPN-PRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKMTRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDY-ASDPEGK-VIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTN-SGQLDMGLLFVCYQHDLEKGFLTVQKRL-NGEALEEYVKPIGGGYFFALPGVKDANDYFGSALL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y4E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97652 for 2898 contacts (-33.7/contact) +
2D Compatibility (PS) -38072 + (NN) -19527 + (LL) 708
1D Compatibility (HY) -29200 + (ID) 6700
Total energy: -190443.0 ( -65.72 by residue)
QMean score : 0.421
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