Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRLIGLVIVALVLLAACGSN--NDKKVTIGVASNDTKAWEKVKELAK-KDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTARALSDVDI--AVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK |
4YAH Chain:X ((29-258)) | ---------------------DPNHIKVGVIVGAEQQVA-EVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLK-DRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKES----PYVNLIVTREDNKDAENVKKFVQAYQSDEVYEA---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YAH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -36233 for 1854 contacts (-19.5/contact) +
2D Compatibility (PS) -24913 + (NN) -15818 + (LL) 4736
1D Compatibility (HY) -17600 + (ID) 4950
Total energy: -94778.0 ( -51.12 by residue)
QMean score : 0.581
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