Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKIMITGALGQIGTELVVKCREIYGTDNVLATDIREPEADSPVQNGPFEILDVTDRDRMFELVRDFEADSLMHMAALLSATAEKNPILAWDLNMGGLMNALEAARTYNL-HFFTPSSIGAFGDSTPKVNTPQVTIQQPTTMYGVNKVAGELLCQYYFKRFGVDTRSVRFPGLISHVKEPGGGTTDYAVEIYFKAVREGHYTSFIDKGTYMDMMYMDDAIEAIIKLMEADDAKLETRNGYNLSAMSFDPEMVKEAIQEYYPNFTLDYDVDPIRQGIANSWPDSIDTSCSRGEWGFDPKYDLASMTKLMLEAIEQKDTVKNNN |
3WMW Chain:A ((27-329)) | --KILIVG---QIGSELALALAERYGRTNVITSD-----------------------GELATVVERHGITQVYLLAA---------PQWAWNLNMTSLLNVLELARQTGLERVFWPSSIAAFGPTTPAGQTPQKTVMEPTTVYGISKQAGEGWCRWYHANHGVDVRSVRYPGLISHKTPPGGGTTDYAVDIFHAAVTGEPYTCFLKEDEALPMMYMPDAIRATIELMEAPADKLSERGSYNIAGMSFTPAQIAAAIREQVPGFQIRYEPD-YRQAIAQGWPDSIDDSVARADWGWKAQYGLKEMVADML------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3WMW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -141182 for 2252 contacts (-62.7/contact) +
2D Compatibility (PS) -28906 + (NN) -12685 + (LL) 2764
1D Compatibility (HY) -24400 + (ID) 6650
Total energy: -211059.0 ( -93.72 by residue)
QMean score : 0.373
|
|
|