Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNYGIPQNAIITIAGTVGVGKSTLTQALADKLN-------FKTSFENVEHNPYLDKFYSDFERWSFHLQIYFLAERFKEQKRMFEYGGGFVQD--------RSIYEDVDIFAKMHEEEGTMSKEDFKTYSDLFNAMVMTPYFPKP---DVMIYLECNYDEVIDRIIERGREMEINTDPEYWKKLFKRYDDWI---------NSFNACPVVRININEYDIHKDPESLNPMIDKIARIIQTYRQVDTR
2A2Z Chain:A ((27-247))
-----------ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTNVLQMMYEKPERWSFTFQTYACLSRIRAQLASL---NGK---EKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWM--NNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE-DFKDKYESL---VEKVKEFLST-------
General information:
TITO was launched using:
RESULT:
Template:
2A2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97694 for 1365 contacts (-71.6/contact) +
2D Compatibility (PS) -20466 + (NN) -5581 + (LL) 1740
1D Compatibility (HY) -14400 + (ID) 2950
Total energy: -139351.0 ( -102.09 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_2A2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A2Z-query.scw
PDB file :
Tito_Scwrl_2A2Z.pdb
: