Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANKKSTN
3OCQ Chain:A ((21-162))
-----YWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFFRM---------
General information:
TITO was launched using:
RESULT:
Template:
3OCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110136 for 1233 contacts (-89.3/contact) +
2D Compatibility (PS) -15591 + (NN) -8795 + (LL) 720
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -151152.0 ( -122.59 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3OCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OCQ-query.scw
PDB file :
Tito_Scwrl_3OCQ.pdb
: