Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFREQVLNLLAEVAENDIVKENPDVEIFEEGIIDSFQTVGLLLEIQNKLDIEVSIMDFDRDEWATPNKIVEALEELR
1GML Chain:A ((60-131))
LQMEEEYIHQLCE----DIIQLKPDVVITEKGISDLAQH--YLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELR
General information:
TITO was launched using:
RESULT:
Template:
1GML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11893 for 426 contacts (-27.9/contact) +
2D Compatibility (PS) -7711 + (NN) -1421 + (LL) 380
1D Compatibility (HY) -2000 + (ID) 1250
Total energy: -23895.0 ( -56.09 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1GML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GML-query.scw
PDB file :
Tito_Scwrl_1GML.pdb
: