Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDVLYPVE--SVLKKDKVNFVQAEVTKIDRDAKKV--------------ETNQGIYD-------FDILVVALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDD----------NDLSILVGGAGFTGVEFLGELTDRIPELCSKY-GVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPIVACNEKGFVVEVDGE-----KQQLNAGTSVWAAGVRGSKLMEESFEGV------KRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAKN------------IKRILNGESTEEFEYVDRGTVCSLGSHDGVGMVFGKPIAGKKAAFMKKVIDTRAVFKIGGIGLAFKKGKF |
| 4GAV Chain:A ((10-417)) | ---DKPNVLILGSGWGAISFL----KHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRR-------TFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRG-LAVNDFLQVKGSNNIFAIGD-NAF--AG----LPPTAQVAHQEAEYLAKNFDKMAQIPNFQKIDLLFEENNFKPFKYNDLGALAYLGSERAIATI------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189764 for 2735 contacts (-69.4/contact) +
2D Compatibility (PS) -36046 + (NN) -4220 + (LL) 4332
1D Compatibility (HY) -24400 + (ID) 5800
Total energy: -255898.0 ( -93.56 by residue)
QMean score : 0.531
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