Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKDSYTANLFDSNSIKQIDINVKTK
1YN3 Chain:A ((160-253))
-----------------------------------------------VPYTITVNGTSQNILSNLTFNKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANLINSSDIKSININI---
General information:
TITO was launched using:
RESULT:
Template:
1YN3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42035 for 628 contacts (-66.9/contact) +
2D Compatibility (PS) -10075 + (NN) -1188 + (LL) 4128
1D Compatibility (HY) -7600 + (ID) 2200
Total energy: -58970.0 ( -93.90 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_1YN3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YN3-query.scw
PDB file :
Tito_Scwrl_1YN3.pdb
: