Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
4NYE Chain:A ((25-255))
--LIYSGKAKDIYTTEDENLIISTYKDQATAFNGVKKEQIAGKGVLNNQISSFIFEKLNVAGVATHFVEKLSDTEQLNKKVKIIPLEVVLRNYTAGSFSKRFGVDEGIALETPIVEFYYKNDDLDDPFINDEHVKFLQIAGDQQIAYLKEETRRINELLKVWFAEIGLKLIDFKLEFGFDKDGKIILADEFSPDNCRLWDADGN-HMDKDVFRRGLGELTDVYEIVWEKLQELK
General information:
TITO was launched using:
RESULT:
Template:
4NYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63697 for 1793 contacts (-35.5/contact) +
2D Compatibility (PS) -24785 + (NN) -5933 + (LL) 404
1D Compatibility (HY) -27200 + (ID) 6100
Total energy: -127311.0 ( -71.00 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_4NYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NYE-query.scw
PDB file :
Tito_Scwrl_4NYE.pdb
: