Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNKDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
2YWR Chain:A ((2-182))
-LKIGVLVSGRGSNLQAIIDAIESGKV-NASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTV-----
General information:
TITO was launched using:
RESULT:
Template:
2YWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119962 for 1477 contacts (-81.2/contact) +
2D Compatibility (PS) -20070 + (NN) -16481 + (LL) 980
1D Compatibility (HY) -18800 + (ID) 3250
Total energy: -177583.0 ( -120.23 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_2YWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWR-query.scw
PDB file :
Tito_Scwrl_2YWR.pdb
: