Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEIVIASNNQGKINDFKVIFPDY--HVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTD--RRAQFVCVISM--SGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
1K7K Chain:A ((2-190))
-QKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVD-SAEETGLTFIENAILKARHAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLL----------
General information:
TITO was launched using:
RESULT:
Template:
1K7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41664 for 1451 contacts (-28.7/contact) +
2D Compatibility (PS) -19950 + (NN) -9508 + (LL) 1124
1D Compatibility (HY) -12400 + (ID) 4150
Total energy: -86548.0 ( -59.65 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1K7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K7K-query.scw
PDB file :
Tito_Scwrl_1K7K.pdb
: