Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTF-IANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
1SYB Chain:A ((9-142))
---------------------------------------------KEPATLIKAIDGDTVKLMSSNGSPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIY-ADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
1SYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5437 for 998 contacts (-5.4/contact) +
2D Compatibility (PS) -14166 + (NN) -7133 + (LL) 3588
1D Compatibility (HY) -10000 + (ID) 2600
Total energy: -35748.0 ( -35.82 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_1SYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SYB-query.scw
PDB file :
Tito_Scwrl_1SYB.pdb
: