Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYNYHLLEDRDVLCIDQKSFFASVSCIEKGLDPL--ETKLAVVADTKRQGSVILAATPKLKELGIK----TGSRLFEIPHRNDIYIINPSMRKYLNVSVAISKIALRYIPPEDLHQYSIDEFFMDVTDSYHRFSSTVHAFCERLKREIYEETGIYCTVGIGSNMLLSKIAMDVEAKHSQNGIAEWRYQDVPTKLWPIQPLRDFWGINRRTEAKLNKRGIFTIGDLAKYPYKFLKKEFGILGVDMHLHANGIDQSKVREKHKISNPSICKSQILMRD-YHFDEAKVVMQELIEDVASRVRARKKVARTIHFAFGYSDEGGVHKQYTLKDPTNLEKDIYKVVMHFADKLCNKQALYRTLSISLSQFINEDERQLSLFEDEYQRKRDECLAKTIDQLHLKYGKGIVSKAVSFTEAGTKHGRLGLMAGHKM |
4R8U Chain:A ((2-274)) | ---------RKIIHVDMDCFFAAV---EMRDNPALRDIPIAIGGSRERRGVISTANYPA-RKFGVRSAMPTGMALKLCPH---LTLLPGRFDAYKEASNHIREIFSRYT--SRIEPLSLDEAYLDVTDSVHCHGSAT-LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITP---AEVPAFLQTL-PLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER--LRKSVGVERTMAEDIHHWSECEAIIERLYPELERRL--------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R8U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107337 for 1973 contacts (-54.4/contact) +
2D Compatibility (PS) -28467 + (NN) -11170 + (LL) 10836
1D Compatibility (HY) -13600 + (ID) 3700
Total energy: -153438.0 ( -77.77 by residue)
QMean score : 0.419
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