Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTHYHFVGIKGSGMSSLAQIMHDLGHEVQGSDIENYVFTEVALRNKGIKI-LPFDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVS----YNDFLGQIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMGLPESDY------FAFEACEYRRHFLSYKPDYAIMTNIDFDH-PDYFKDINDVFDAFQEMAHNVKKGIIAWGDDE---HLRKIEADVPIYYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFN------ETTIANQVIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRVFLCEIFGSIRENTGALTIQDLIDKIE--GASLINEDSINVLEQF----DNAVVLFMGAGDIQKLQNAYLDKLGMKNAF |
| 1J6U Chain:A ((5-431)) | -----FVGIGGIGMSAVALHEFSNGNDVYGSNIEETERT-AYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTLKR--EKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKGNGPVVYELDESEEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDL-VVTFAEDELTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEK--------NGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNI---YVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHR--------GNFAKALQLADEVVVTEVYD---------SGKMIWDSLKSLGKEAYFVEKLPELEKVISVSENTVFLFVGAGDI----------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1J6U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 18496 for 3033 contacts (6.1/contact) +
2D Compatibility (PS) -38125 + (NN) 8408 + (LL) 3916
1D Compatibility (HY) 13200 + (ID) 1550
Total energy: 4345.0 ( 1.43 by residue)
QMean score : 0.072
|
|
|