Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALLKNFFIGLSNNSFLNNAAKKVGPRLGANKVVAGNTIPELINTIEYLNDKNIAVTVDNLGEFVGTVEESNHAKEQILTIMDALHQ--------------------HGVKAHMSVKLSQLGA-------EFDLELAYQNLREILLKANTYNNMHINIDTEKYASLQQIVQVLDRLKGEFRN---VGTVIQAY-------------LYDSHKLVDKYQDLRLRLVKGAYKENESI----------AFQSKEDVDANYIKIIEQRLLNAR-NFTSIATHDHRIINHVKQFMKENHIEKDRMEFQMLYGFRSELAEEIANEGYNFTIYVPYGD--DWFAYFMRRLAERPQNLSLAVKEFVKPAGLKRVGIIAALGATVMLGLSTIKKLCRK |
| 4NM9 Chain:A ((117-453)) | -----------------------------ARQFIVGETTKEAVKNLEKLRKDGFAAVVDVLGEATLSEEEAEVYTNTYLELLEALKKEQGSWKGLPGKGGDPGLDWGHAPKVNIAVKPTALFCLANPQDFEGSVVAILDRMRRIFKKVMELNGF-LCIDMESYRHKEIILEVFRRLKLEYRDYPHLGIVLQAYLKDNDKDLDDLLAWAKEHKV-----QISVRLVKGAYWDYETVKAKQNDWEVPVWTIKAESDAAYERQARKILENHQICHFACASHNIRTISAVMEMARELNVPEDRYEFQVLYGMAEPVRKGILKVAGRIRLYAPYGNMVPGMGYLVRRLLENTANESFLRQSFAEDAQIERL----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NM9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114499 for 2184 contacts (-52.4/contact) +
2D Compatibility (PS) -29711 + (NN) -7311 + (LL) 3984
1D Compatibility (HY) -18000 + (ID) 4400
Total energy: -169937.0 ( -77.81 by residue)
QMean score : 0.471
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