Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSETIFGKILTGEIPSFKVYEDDYVYAFLDISQVTKGHTLLIPKKASANIFETDEETMKHIGAALPKVANAIKRAFNPDG---LNIIQNNGEFADQSVFHIHFHLIPRYENDIDGFGYKWET---HEDILDNDAKQQIAEQIQAQF
3KSV Chain:A ((13-141))
---CIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVA---GPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKT-GLKIGWDTVKVASDELAEDAKR----------
General information:
TITO was launched using:
RESULT:
Template:
3KSV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61222 for 787 contacts (-77.8/contact) +
2D Compatibility (PS) -13144 + (NN) -5692 + (LL) 1996
1D Compatibility (HY) -8000 + (ID) 2550
Total energy: -88612.0 ( -112.59 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_3KSV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KSV-query.scw
PDB file :
Tito_Scwrl_3KSV.pdb
: