Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVEIESIEHELEESIASLRQAGIRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYG-DSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
4LMY Chain:A ((14-149))
------------ENVLEHLREKHIRITETRKAIISYMIQSTEHPSADKIYRDLQPNFPNMSLATVYNNLKVLVDEGFVSELKISNDLTTYYDFMGHQHVNVVCEICGKIADFMDVDVMDIAKEAHEQTGYKVTRIPVIAYGICPDCQA-
General information:
TITO was launched using:
RESULT:
Template:
4LMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63701 for 847 contacts (-75.2/contact) +
2D Compatibility (PS) -15030 + (NN) -8001 + (LL) 1452
1D Compatibility (HY) -14400 + (ID) 3000
Total energy: -102680.0 ( -121.23 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4LMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LMY-query.scw
PDB file :
Tito_Scwrl_4LMY.pdb
: