Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDDIQKIKKELSELVERVDDVEILANETADHVLELREEHKQHHNELRESHKELKDKQDKVVDENLEQTKILNRIEERYQTQVDVAQKNEEKTL-AQNKWLVGAIWALVTIVMIAVITASITALLP
1MDT Chain:A ((209-291))
----------------------------------IRDKTKTKIESLKE-HGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVIDS-------
General information:
TITO was launched using:
RESULT:
Template:
1MDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4195 for 449 contacts (9.3/contact) +
2D Compatibility (PS) -8564 + (NN) -1268 + (LL) 3780
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -4507.0 ( -10.04 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_1MDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MDT-query.scw
PDB file :
Tito_Scwrl_1MDT.pdb
: