Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLLMNFFIVSPLLLATIATDFTPVPLSSNQIIKTAKASTNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN
5TSS Chain:A ((1-194))
----------------------------------------STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN
General information:
TITO was launched using:
RESULT:
Template:
5TSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27554 for 1458 contacts (-18.9/contact) +
2D Compatibility (PS) -20692 + (NN) -6812 + (LL) 3408
1D Compatibility (HY) -23200 + (ID) 9700
Total energy: -84550.0 ( -57.99 by residue)
QMean score : 0.733
(partial model without unconserved sides chains):
PDB file :
Tito_5TSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5TSS-query.scw
PDB file :
Tito_Scwrl_5TSS.pdb
: