Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGAKNIR--FMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK
3DMP Chain:A ((9-213))
--NLFILDHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYR-ADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFG--
General information:
TITO was launched using:
RESULT:
Template:
3DMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172143 for 1599 contacts (-107.7/contact) +
2D Compatibility (PS) -21136 + (NN) -1072 + (LL) 340
1D Compatibility (HY) -24000 + (ID) 5750
Total energy: -223761.0 ( -139.94 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_3DMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMP-query.scw
PDB file :
Tito_Scwrl_3DMP.pdb
: