Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHNLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL
2J87 Chain:A ((4-175))
-------GHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSNDN----------------ALEATKLCDVL-QSITDFSVIGIDEGQFFPD-IVEFCERMANEGKIVIVAALDGTFQRKPFNNILNLLILSEMVVKLTAVCMKCFKEASFSKRL--GEETEIE----IIGGNDMYQSVCRKCYV-----------
General information:
TITO was launched using:
RESULT:
Template:
2J87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84888 for 1243 contacts (-68.3/contact) +
2D Compatibility (PS) -17060 + (NN) -7676 + (LL) 2404
1D Compatibility (HY) -16400 + (ID) 3400
Total energy: -127020.0 ( -102.19 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_2J87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J87-query.scw
PDB file :
Tito_Scwrl_2J87.pdb
: