Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGH-FAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
1VHW Chain:A ((4-233))
---ATPHINAQMGDFADVVLMPGDPLRAKYIAENFLDNAVQVCDVRNMFGYTGTYKGRRISVMGHGMGIPSCSIYVTELIKDYGVKKIIRVGSCGAVNEGIKVRDVVIGMGACTDSK-VNRIRFKDHDFAAIADYKMVKAAEEAAKARGIDVKVGNLFSAELFYTPDPSMFDVMDKYGIVGVEMEAAGIYGVAAEYGAKALAICTVSDHIKTGEQTTSEERQNTFNEMIEIALD---
General information:
TITO was launched using:
RESULT:
Template:
1VHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143886 for 2018 contacts (-71.3/contact) +
2D Compatibility (PS) -24332 + (NN) -6871 + (LL) 868
1D Compatibility (HY) -24000 + (ID) 6200
Total energy: -204421.0 ( -101.30 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1VHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHW-query.scw
PDB file :
Tito_Scwrl_1VHW.pdb
: