Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLL-FVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVIDRT----LKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAA--GLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
2H2F Chain:A ((9-242))
----------LLNESRLTVTLTGAGISTPSGIPD------------QN------VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE
General information:
TITO was launched using:
RESULT:
Template:
2H2F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113735 for 1792 contacts (-63.5/contact) +
2D Compatibility (PS) -22511 + (NN) -2324 + (LL) 1380
1D Compatibility (HY) -21600 + (ID) 4500
Total energy: -163290.0 ( -91.12 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_2H2F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H2F-query.scw
PDB file :
Tito_Scwrl_2H2F.pdb
: