Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKINDINDLVNATFQ-------VKKFFRDTKKKFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISELEEYIKN
4RBR Chain:A ((6-96))
-------NDTVFGILQLETLLGDINSIFSEIESEYKMSREEILILLTLWQKGS--MTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPVDDERTVIIH----------------------
General information:
TITO was launched using:
RESULT:
Template:
4RBR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23054 for 490 contacts (-47.0/contact) +
2D Compatibility (PS) -8669 + (NN) -2486 + (LL) 2496
1D Compatibility (HY) -8800 + (ID) 1400
Total energy: -41913.0 ( -85.54 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_4RBR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RBR-query.scw
PDB file :
Tito_Scwrl_4RBR.pdb
: