Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLVTATTLTAGIGTALVGQAHHADAAENYTNYNNYNYNTTQTTTTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNH-----TPSKGAILQSSEGPF---GHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
4CSH Chain:A ((71-139))
----------------------------------------------------------------------------------RTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNG-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4CSH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7820 for 303 contacts (-25.8/contact) +
2D Compatibility (PS) -6989 + (NN) -5542 + (LL) 5008
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -19193.0 ( -63.34 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_4CSH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CSH-query.scw
PDB file :
Tito_Scwrl_4CSH.pdb
: