Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFNQFENQNFFNGNPSDTFKDLGKQVFNYFSTPSFVTNIYETDELYYLEAELAGVNKEDISIDFNNNTLTIQATRSAKY--KSEQLILDE-RNFESLMRQFDFEA-VDKQHITASFENGLLTITLPKIKPSNETTSSTSIPIS
4I88 Chain:A ((46-135))
--------------------------------------SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPK----------------
General information:
TITO was launched using:
RESULT:
Template:
4I88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47914 for 492 contacts (-97.4/contact) +
2D Compatibility (PS) -9238 + (NN) 1153 + (LL) 1680
1D Compatibility (HY) -7600 + (ID) 1700
Total energy: -63619.0 ( -129.31 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4I88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I88-query.scw
PDB file :
Tito_Scwrl_4I88.pdb
: