Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVI-DKYYL
1BQ4 Chain:D ((1-228))
-PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYL
General information:
TITO was launched using:
RESULT:
Template:
1BQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89522 for 1906 contacts (-47.0/contact) +
2D Compatibility (PS) -23934 + (NN) -4728 + (LL) 208
1D Compatibility (HY) -18400 + (ID) 5700
Total energy: -142076.0 ( -74.54 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_1BQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BQ4-query.scw
PDB file :
Tito_Scwrl_1BQ4.pdb
: