Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSWGAAKQLD----TASHFVLIFARKNVTSRSPY---VQHMLRDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQDPPKN----KTRQAYEDVIEWVGPKE
1V5Y Chain:A ((11-214))
--------------RYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHD-SFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQK----EAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFAD----ELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVI-------
General information:
TITO was launched using:
RESULT:
Template:
1V5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53676 for 1361 contacts (-39.4/contact) +
2D Compatibility (PS) -20825 + (NN) -8309 + (LL) 2212
1D Compatibility (HY) -11600 + (ID) 3500
Total energy: -95698.0 ( -70.31 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1V5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V5Y-query.scw
PDB file :
Tito_Scwrl_1V5Y.pdb
: